32nd Molecular Modelling Workshop 2018     MGMS Logo
 



 

Program

 

 

Program: Monday, March 12th 2018
 
11:00-13:00 Pre-conference workshop (Computer-Chemistry-Center, Nägelsbachstr. 25)  
11:00-14:00 Registration (Conference Location - Institute of Biochemistry, Fahrstr. 17)  
14:00-14:10 Welcome remarks / Agenda review  
14:10-15:10 P1: Gerhard Wolber
Exploring Protein-Ligand Binding Using 3D Pharmacophore Patterns
Abstract
15:10-15:30 L1: Lena Hefke
Using Protein Ligand Interaction Fingerprints and Machine Learning tools for the prediction of novel dual active compounds
Abstract
15:30-15:50 L2: Xuejin Zhang
Novel Chemical Space Driven By Reaction Network
Abstract
15:50-16:10 L3: Arkadii Lin
Generative Topographic Mapping approach as a Ligand-based Virtual Screening tool
Abstract
16:10-16:30 Coffee break  
16:30-16:50 L4: Bahanur Becit 
Molecular mechanisms of mesoporous silica formation from colloid solution
Abstract
16:50-17:10 L5: Dominik Munz
How to Tame Palladium Terminal Oxos and Imidos
Abstract
17:10-17:30 L6: Birgit J. Waldner
Multiscale Simulation and Experimental Characterization of Epoxy/Polyaniline Nanocomposite Coatings – Towards the Rational Design of Nanocomposite Coatings Used in Corrosion Protection
Abstract
17:30-18:30 Annual Meeting of the MGMS-DS e.V.  
19:00 Buffet - Dinner  
 
Program: Tuesday, March 13th 2018
 
08:30-08:50 L7: Christian A. Söldner
Interaction of Glycolipids with the Macrophage Surface Receptor Mincle
Abstract
08:50-09:10 L8: Floriane Martins
Classical Molecular Docking Procedures in the Context of Enzyme Engineering
Abstract
09:10-09:30 L9: Denis Schmidt
Cryptic Site Identification and Evaluation of Their Role for Allostery
Abstract
09:30-10:50 L10: David Wifling
Constitutive activity of the human histamine H4 receptor: Computational studies on wild-type and mutant H4R orthologs
Abstract
09:50-10:20 Coffee break & Conference photo  
10:20-10:40 L11: Tatjana Braun (Schrödinger)
Molecular Modelling for Macrocycle Design
Abstract
10:40-11:00 L12: Gunter Stahl (OpenEye)
Orion: CADD on the Cloud
Abstract
11:00-12:00 P2: Pavel Hobza
Semiempirical Quantum Mechanics (SQM)-based Scoring Functions for Native Protein-Ligand Pose Recognition and Virtual Screening
Abstract
12:00-13:30 Lunch  
13:30-14:30 Poster Session I  
14:30-14:50 L13: Krzysztof K Bojarski
Impact of chondroitin sulfate-4 on human and rat cathepsin K collagenolytic activity
Abstract
14:50-15:10 L14: Nils-Ole Friedrich
Assessment of the diversity of protein-bound ligand conformations and their representation with conformer ensembles
Abstract
15:10-15:30 L15: Marko Hanževacki
The Entry of CoA into Enzymes: A Case Study with Pyruvate Formate-Lyase
Abstract
15:30-15:50 L16: Ghulam Mustafaa
Influence of Mutation of the Transmembrane Helix of CYP17A1 on Catalytic Domain-membrane Interactions and Function
Abstract
15:50-16:10 Coffee break  
16:10-16:30 L17: Magdalena M. Scharf
Computer-­aided design of ligands with tailored efficacies for the β2­-adrenergic receptor
Abstract
16:30-16:50 L18:  Christian R. Wick
Modelling the reactions catalyzed by coenzyme B12 dependent enzymes: Accuracy and cost-quality balance
Abstract
16:50-17:10 L19: Hilmi Yavuzer
Rationalizing the enantioselectivity of aldoxime dehydratases
Abstract
17:10-18:10 P3: Marc Hamm
Facets of Materials Modelling at Henkel
Abstract
18:30 Social Event: Bierkeller (Steinbach Bräu)  
 
Program: Wednesday, March 14th 2018
 
08:30-08:50 L20: Dominik Budday
Bridging Rigidity Theory and Normal Modes
Abstract
08:50-09:10 L21: Oliver Lemke
Kinetic models of the Cyclosporines A and E
Abstract
09:10-09:30 L22: Sehee Na
Thermodynamic Integration Network Study of Electron Transfer: from Proteins to Aggregates
Abstract
09:30-09:50 L23: Nicolas Tielker
Prediction of acidity constants and pH-dependent microstate populations for drug-like compounds
Abstract
09:50-10:10 Coffee break  
10:10-11:10 Poster Session II  
11:10-11:30 L24: Akinjide Oluwajobi
Atomistic Modelling of Materials in Nanomachining 
Abstract
11:30-11:50 L25: Zahrabatoul Mosapour Kotena
Investigate the effect of OH group’s orientation in Natural and Rare Sugars: DFT-AIM-NBO Study
Abstract
11:50-12:10 L26: Enric Herrero
Hydrophobic Similarity: Application to Three-Dimensional Molecular Overlays with PharmScreen
Abstract
12:10-13:30 Lunch  
13:30-13:50 L27: Conrad Stork
Hit Dexter: A Machine-learning Model for the Prediction of Frequent Hitters
Abstract
13:50-14:10 L28: Melanie Schneider
Improving ligand screening by exploiting structure ensembles and machine learning
Abstract
14:10-15:10 P4: Bernd Engels
Towards the rational design of covalent inhibitors
Abstract
15:10-15:30 Poster & Lecture awards, Closing  

Poster Session I

Tuesday, March 13th, 13:30

 
P01 Yannic Alber
(Dortmund, Germany)
Optimization of Protein-Ligand Binding Affinities Based on Integral Equation theory Abstract
 
P02 Meriem Almi
(Alger, Algeria)
Prediction of first-order nonlinear optical properties of Anderson polyoxometalate derivatives Abstract
 
P03 Hamid A. Lordejani
(Isfahan, Iran)
New and mild method for the synthesis of alprazolam and diazepam and computational study of binding mode of them to GABAA receptor Abstract
 
P04 Frank Beierlein
(Erlangen, Germany)
Spin-Labelled DNA Oligomers: Simulations and Experiment Abstract
 
P05 Lauritz T. Bußfeld
(Hannover, Germany)
Towards the coarse-grained modelling of dimethacrylate-based biomaterials Abstract
 
P06 Ya Chen
(Hamburg, Germany)
Comparative Analysis of the Chemical Space of Known and Purchasable Natural Products Abstract
 
P07 Christina de Bruyn Kops
(Hamburg, Germany)
Generating Structures of Likely Metabolites Based on Predicted Cytochrome P450 Regioselectivity Abstract
 
P08 Benedikt Diewald
(Erlangen, Germany)
Study of the Hapten-Binding Properties of Antibody B1-8 Using Steered Molecular Dynamics Abstract
 
P09 Jonas Dittrich
(Düsseldorf, Germany)
Converging a knowledge-based scoring function: DrugScore2017 Abstract
 
P10 Malti Dumbani
(Berlin, Germany)
Design of Novel Ligands for Thymic Stromal Lymphoetin Abstract
 
P11 Lukas Eberlein
(Dortmund, Germany)
pH- and pressure dependent tautomeric and conformational equilibria Abstract
 
P12 Holger Elsen
(Erlangen, Germany)
Hydrogen Activationby complex aluminates Abstract
 
P13 Ningning Fan
(Hamburg, Germany)
Machine learning models for guiding protein structure selection lead to a boost in the performance of ensemble docking Abstract
 
P14 Lena Hefke
(Frankfurt, Germany)
Using Protein Ligand Interaction Fingerprints and Machine Learning tools for the prediction of novel dual active compounds Abstract
 
P15 Enric Herrero
(Barcelona, Spain)
From continuum solvation models to hydrophobic descriptors: Application to Three-Dimensional Molecular Overlays with PharmScreen Abstract
 
P16 Peter W. Hildebrand
(Berlin, Germany)
Role of structural flexibility for signal transduction by G protein coupled receptors Abstract
 
P17 Michael C. Hutter
(Saarbrücken, Germany)
Conservation and Relevance of Pharmacophore Point Types Abstract
 
P18 Suresh Kumar
(Guwahati, India)
Storage Capacity of Clathrate Hydrates for Storing Small Molecules Abstract
 
P19 Amir H. Hakimioun
(Erlangen, Germany)
Enzyme-Independent Chemical Reactions for Chemistry in Living Cells Abstract
 
Please remember to remove your poster afterwards!
 

Poster Session II

Wednesday, March 14th, 10:10

 
P01 Julia B. Jasper
(Dortmund, Germany)
Mapping Binding Site Thermodynamics by 3D RISM Theory for Drug Design Abstract
 
P02 Jan Joswig
(Berlin, Germany)
Allosteric Control of pH-Sensitive Ca(II)-Binding in Langerin Abstract
 
P03 Michael Krug
(Merck, Germany)
SimDoC - Simulate Dose and Clearance Abstract
 
P04 Natallia Kulik
(Nové Hrady, Czech Republic)
Computational modeling of effective inhibitors of topoisomerase IA Abstract
 
P05 Oliver Lemke
(Berlin, Germany)
Kinetic models of the Cyclosporines A and E Abstract
 
P06 Ghulam Mustafa
(Heidelberg, Germany)
Simulation of Human P450-membrane Interactions Abstract
 
P07 Sehee Na
(Freiburg, Germany)
Thermodynamic Integration Network Study of Electron Transfer: from Proteins to Aggregates Abstract
 
P08 Jasmina Petrova
(Sofia, Bulgaria)
Study of a multilipid receptor-embedded cell membrane in different ensembles Abstract
 
P09 Tim Pongratz
(Dortmund, Germany)
Strategies for developing pressure-dependent force fields Abstract
 
P10 Nicola Porta
(Düsseldorf, Germany)
Impact of allosteric inhibitors on MRSA pyruvate kinase conformational dynamics Abstract
 
P11 Malte Schäfer
(Hannover, Germany)
Implementing highly selective sorption sites in metal-organic frameworks – a force field study Abstract
 
P12 Melanie Schneider
(Montpellier, France)
Improving ligand screening by exploiting structure ensembles and machine learning Abstract
 
P13 Martin Urban
(Dortmund, Germany)
Computational structure analysis for membrane-bound potassium channels Abstract
 
P14 Vishal Nemaysh
(Delhi, India)
Plausible Involvement of K634 and T681 Mutations in Modulation of Tertiary Structure of Human PDGFR-β Protein Kinase Domain by Computational Molecular Dynamics Analysis Abstract
 
P15 Birgit J. Waldner
(Innsbruck, Austria)
Multiscale Simulation and Experimental Characterization of Epoxy/Polyaniline Nanocomposite Coatings – Towards the Rational Design of Nanocomposite Coatings Used in Corrosion Protection Abstract
 
P16 David Wifling
(Regensburg, Germany)
Constitutive activity of the human histamine H4 receptor: Computational studies on wild-type and mutant H4R orthologs Abstract
 
P17 Hilmi Yavuzer
(Bielefeld, Germany)
Rationalizing the enantioselectivity of aldoxime dehydratases Abstract
 
P18 Xuejin Zhang
(Boehringer Ingelheim, Germany)
Novel Chemical Space Driven By Reaction Network Abstract
 
P19 Ibrahim Maqboul
(Erlangen, Germany)
Modelling Charge-Transport Pathways in Covalent Organic Frameworks Abstract